sort参数
image.png
按3列排
root 07:39:03 ~/data/Data
$ less -S example.gtf |sort -k 3 |less -S
chr1 ENSEMBL CDS 127149 127938 . - 1 gene_id "ENSG000002
chr1 ENSEMBL CDS 129119 129483 . - 0 gene_id "ENSG000002
chr1 ENSEMBL CDS 14601 14706 . - 0 gene_id "ENSG000002
chr1 HAVANA CDS 25004 25037 . - 1 gene_id "ENSG000002
chr1 HAVANA CDS 25140 25344 . - 2 gene_id "ENSG000002
chr1 HAVANA CDS 25584 25599 . - 0 gene_id "ENSG000002
chr2 HAVANA CDS 31611 31627 . - 2 gene_id "ENSG000001
chr2 HAVANA CDS 35440 36385 . - 0 gene_id "ENSG000001
chr1 ENSEMBL CDS 4022 4249 . + 0 gene_id "ENSG000002
chr1 ENSEMBL CDS 42912 42930 . + 0 gene_id "ENSG000002
chr1 ENSEMBL CDS 44693 44796 . + 2 gene_id "ENSG000002
chr1 ENSEMBL CDS 4562 4692 . - 2 gene_id "ENSG000002
chr1 ENSEMBL CDS 4833 4901 . - 2 gene_id "ENSG000002
chr1 ENSEMBL CDS 5659 5764 . - 0 gene_id "ENSG000002
按4列排
root 07:43:23 ~/data/Data
$ less -S example.gtf |sort -k 4 |less -S
chr1 HAVANA exon 100816 101220 . - . gene_id "ENSG000002
chr1 HAVANA transcript 100816 119036 . - . gene_id "EN
chr1 HAVANA exon 102563 102667 . - . gene_id "ENSG000002
chr1 HAVANA exon 102563 102667 . - . gene_id "ENSG000002
chr1 HAVANA exon 102563 102667 . - . gene_id "ENSG000002
chr1 HAVANA exon 110584 110795 . - . gene_id "ENSG000002
chr1 HAVANA exon 110638 110795 . - . gene_id "ENSG000002
chr1 HAVANA exon 118918 119036 . - . gene_id "ENSG000002
chr1 HAVANA exon 118918 119080 . - . gene_id "ENSG000002
chr1 HAVANA exon 118944 119086 . - . gene_id "ENSG000002
chr1 HAVANA transcript 118944 123429 . - . gene_id "EN
chr1 HAVANA gene 120967 123786 . + . gene_id "ENSG000002
chr1 HAVANA exon 120967 123786 . + . gene_id "ENSG000002
chr1 HAVANA transcript 120967 123786 . + . gene_id "EN
:
按照4列数值大小排序
$ less -S example.gtf |sort -k 4 -n |less -S
chr1 ENSEMBL exon 1737 2090 . + . gene_id "ENSG000002
chr1 ENSEMBL transcript 1737 4275 . + . gene_id "EN
chr1 ENSEMBL UTR 1737 2090 . + . gene_id "ENSG000002
chr1 HAVANA gene 1737 4275 . + . gene_id "ENSG000002
chr1 HAVANA exon 1873 1920 . + . gene_id "ENSG000002
chr1 HAVANA transcript 1873 3533 . + . gene_id "EN
chr1 HAVANA exon 2042 2090 . + . gene_id "ENSG000002
chr1 ENSEMBL exon 2476 2584 . + . gene_id "ENSG000002
chr1 ENSEMBL UTR 2476 2584 . + . gene_id "ENSG000002
chr1 HAVANA exon 2476 2560 . + . gene_id "ENSG000002
chr1 HAVANA exon 2838 2915 . + . gene_id "ENSG000002
chr1 ENSEMBL exon 3084 4275 . + . gene_id "ENSG000002
chr1 ENSEMBL UTR 3084 4021 . + . gene_id "ENSG000002
chr1 HAVANA exon 3084 3237 . + . gene_id "ENSG000002
:
