安装
(rnaseq) root 11:55:29 ~
$ conda install -y salmon
Collecting package metadata (current_repodata.json): done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.9.2
latest version: 4.10.1
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /root/miniconda3/envs/rnaseq
added / updated specs:
- salmon
The following packages will be downloaded:
package | build
---------------------------|-----------------
boost-cpp-1.74.0 | h312852a_4 16.3 MB https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
jemalloc-5.2.1 | h9c3ff4c_5 1.7 MB https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
salmon-1.5.0 | h84f40af_0 5.6 MB https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
tbb-2020.2 | h4bd325d_4 1.5 MB https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
------------------------------------------------------------
Total: 25.0 MB
The following NEW packages will be INSTALLED:
boost-cpp anaconda/cloud/conda-forge/linux-64::boost-cpp-1.74.0-h312852a_4
jemalloc anaconda/cloud/conda-forge/linux-64::jemalloc-5.2.1-h9c3ff4c_5
salmon anaconda/cloud/bioconda/linux-64::salmon-1.5.0-h84f40af_0
tbb anaconda/cloud/conda-forge/linux-64::tbb-2020.2-h4bd325d_4
Downloading and Extracting Packages
jemalloc-5.2.1 | 1.7 MB | ######################################## | 100%
tbb-2020.2 | 1.5 MB | ######################################## | 100%
salmon-1.5.0 | 5.6 MB | ######################################## | 100%
boost-cpp-1.74.0 | 16.3 MB | ######################################## | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(rnaseq) root 11:57:05 ~
查看
(rnaseq) root 11:57:05 ~
$ salmon --help
salmon v1.5.0
Usage: salmon -h|--help or
salmon -v|--version or
salmon -c|--cite or
salmon [--no-version-check] <COMMAND> [-h | options]
Commands:
index : create a salmon index
quant : quantify a sample
alevin : single cell analysis
swim : perform super-secret operation
quantmerge : merge multiple quantifications into a single file
(rnaseq) root 11:58:03 ~
$ salmon
salmon v1.5.0
Usage: salmon -h|--help or
salmon -v|--version or
salmon -c|--cite or
salmon [--no-version-check] <COMMAND> [-h | options]
Commands:
index : create a salmon index
quant : quantify a sample
alevin : single cell analysis
swim : perform super-secret operation
quantmerge : merge multiple quantifications into a single file
(rnaseq) root 11:58:44 ~
